Publications
Pre Prints
Journal Publications and Conference Proceedings
A single-cell gene regulatory network inference method for identifying complex regulatory dynamics across cell phenotypes
Communications Biology (in press), 2022
Jianhao Peng, Guillermo Serrano, Ian M. Traniello, Maria E. Calleja-Cervantes, Ullas V. Chembazhi, Sushant Bangru, Teresa Ezponda, Juan Roberto Rodriguez-Madoz, Auinash Kalsotra, Felipe Prosper, Idoia Ochoa, Mikel Hernaez ($)
Imaging-AMARETTO: An imaging genomics software tool to interrogate multiomics networks for relevance to radiography and histopathology imaging biomarkers of clinical outcomes
JCO clinical cancer Informatics, 2020
Olivier Gevaert, Mohsen Nabian, Shaimaa Bakr, Celine Everaert, Jayendra Shinde, Artur Manukyan, Ted Liefeld, Thorin Tabor, Jishu Xu, Joachim Lupberger, Brian J Haas, Thomas F Baumert, Mikel Hernaez, Michael Reich, Francisco J Quintana, Erik J Uhlmann, Anna M Krichevsky, Jill P Mesirov, Vincent Carey, Nathalie Pochet
GABAC: an arithmetic coding solution for genomic data
Bioinformatics, 2020
J. Voges, T. Paridaens, F. Müntefering, L. S. Mainzer, B. Bliss, M. Yang, I. Ochoa, J. Fostier, J. Ostermann, M. Hernaez($)
Genomic data compression
Annual Review of Biomedical Data Science, 2019
M. Hernaez($), D. Pavlichin, T. Weissman, I. Ochoa
Conference Presentations (non-proceedings) and Posters
PhD Thesis
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